HPC Grid tutorials

Connect to the Grid

• How to setup and use Google Authenticator for the Grid
• How to Setup PuTTY for the Grid
• How to Generate and Use SSH Keys with PuTTY
• How to Use OpenSSH to Connect to the Grid
• How to Connect to the Grid Using Bitvise
• How to Connect to the Grid OnDemand
• How to SSH to the Grid on macOS
• How to SSH to the Grid in Visual Studio Code

Transfer files to the Grid

• How to Setup WinSCP
• How to Use FileZilla
• How to Setup PSFTP
• How to Setup Globus
• How to Manage Your Files OnDemand

Grid basics

• How to Apply for a Grid Account
• Frequently Asked Questions
• Why Walltimes are Important
• How to Edit Text Using Nano Text Editor
• How to Use Vim
• How to Use the Screen Command
• How to Modify Environmental Variables
• How to Check Disk Quota
• How to Load Modules
• How to Retrieve Files from the pNFS Snapshot
• Storage Solutions
• Getting Started with Open Science Grid (OSG)

Run jobs

• Introduction to Slurm
• How to Run and Monitor Jobs for Slurm
• How to Run an Interactive Job
• How to Run a Multicore Job
• How to Run a GPU Job
• How to Run an MPI Job
• How to Utilize Features and Constraints

Run applications

• How to Run a Converge Job
• How to Run a Gaussian Job
• How to Run Jupyter Notebook OnDemand
• How to Create a Conda Environment
• How to Create a Conda Environment for Jupyter Notebook OnDemand
• How to Run Pyspark with Jupyter Notebook OnDemand
• How to Run PyCharm OnDemand
• How to Run Matlab OnDemand
• How to Run MATLAB
• How to Run a LS-DYNA Job
• How to Run a NAMD Job
• How to Run R
• How to Use SAMtools
• How to Run STATA
• How to Run a Job for Tensorflow
• How to Run Xming
• How to Run X11
• How to Run XQuartz on macOS

Compiling code

• How to Compile with C/C++
• How to Compile Something with Fortran
• How to Prepare to Develop and Compile Code for the NVIDIA Tesla
• How to Compile Using Intel's Open Fabrics